Thursday, November 14, 2019

19 Nov.: Writing abstracts

Here is the link to the web resource on integrity in scientific writing, which I mentioned in class:
https://ori.hhs.gov/avoiding-plagiarism-self-plagiarism-and-other-questionable-writing-practices-guide-ethical-writing

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For Tuesday 19 November, read one of these four articles and write an abstract for it. Make it in a form that someone else can read, but not necessarily to turn in (printed, legibly handwritten, or
on digital device).

Landfill restoration and biodiversity: A case of study in Northern Italy

Whales originated from aquatic artiodactyls in the Eocene epoch of India

Coevolution of Deadly Toxins and Predator Resistance: Self-Assessment of Resistance by Garter Snakes Leads to Behavioral Rejection of Toxic Newt Prey 

Environmental implications of soil remediation using the Fenton process

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An abstract must contain the essential elements of the report: it must tell the readers what problem was addressed and the most important results that are being reported. Usually it also indicates something about the importance of the work, such as what it contributes to a long-standing area of research. It may also tell which methods were used, but usually not in detail (unless a new method is part of the report).

A useful formula for constructing abstracts is 1) an opening sentence that indicates what the general area of research is, often as a general statement of an important process or problem; 2) a second sentence that shows where within that area the present report belongs; and 3) something like "Here we present..." or "We have measured/tested..." or "To test this hypothesis, we...". This is followed by an outline of the main results and then a concluding sentence saying why this is so important.

Here are two examples:

Covariation between human pelvis shape, stature, and head size alleviates the obstetric dilemma
B. Fischer and P. Mitteroecker 
2015: PNAS 112:5655-5660.


Compared with other primates, childbirth is remarkably difficult in humans because the head of a human neonate is large relative to the birth-relevant dimensions of the maternal pelvis. It seems puzzling that females have not evolved wider pelvises despite the high maternal mortality and morbidity risk connected to child- birth. Despite this seeming lack of change in average pelvic morphology, we show that humans have evolved a complex link between pelvis shape, stature, and head circumference that was not recognized before. The identified covariance patterns contribute to ameliorate the obstetric dilemma.Females with a large head, who are likely to give birth to neonates with a large head, possess birth canals that are shaped to better accommodate large-headed neonates. Short females with an increased risk of cephalopelvic mismatch possess a rounder inlet, which is beneficial for obstetrics. We suggest that these covariances have evolved by the strong correlational selection resulting from childbirth. Although males are not subject to obstetric selection, they also show part of these association patterns, indicating a geneticdevelopmental origin of integration.


On the Origin of Species by Natural and Sexual Selection 
GS van Doorn, P Edelaar, and FJ Weissing 
2009: Science 326:1704-1707.

Ecological speciation is considered an adaptive response to selection for local adaptation. However, besides suitable ecological conditions, the process requires assortative mating to protect the nascent species from homogenization by gene flow. By means of a simple model, we demonstrate that disruptive ecological selection favors the evolution of sexual preferences for ornaments that signal local adaptation. Such preferences induce assortative mating with respect to ecological characters and enhance the strength of disruptive selection. Natural and sexual selection thus work in concert to achieve local adaptation and reproductive isolation, even in the presence of substantial gene flow. The resulting speciation process ensues without the divergence of mating preferences, avoiding problems that have plagued previous models of speciation by sexual selection.

Friday, October 11, 2019

22 Oct.: The story in a scientific report

***Next class meeting is 22 Oct. - I am away on 15 Oct.***

Find the book Writing Science by Joshua Schimel on u:search. You can get the full text online bu clicking on "Online-Zugriff" under the entry for the book, and then click on "EBSCOhost eBooks" under "Online Zugriff." You may have to log on with your UniVie account. 

Read chapter 4, "Story Structure."

Next, find two primary research articles of interest to you, in two different journals, and identify the story elements in each article: Opening, Challenge, Action, and Resolution

For one of your articles (or both if you feel like it), write a short outline of the story in complete sentences, in terms of Schimel's OCAR (or ABCDE).

What is good or bad about the titles of these articles? Can you think of ways to improve the titles?

Finally, compose a title for an article or proposal that you might like to write. Make one title that is compose two titles for a report or proposal you are writing or might like to write. One title should be more technical, as for a specialized journal, and the other more general and catchy, as for a presentation to a broader audience.

Optional: Look for a particularly bad article title, and bring it to share with the class.

In case you are interested, there is a series of videos with Josh Schimel:
https://vimeo.com/17432903